Resumo. Abstract Aim Avicennia schaeuriana is one of the six species that composes the mangrove forests of Brazil and form mangrove fringes along waterways. The mangrove-roots of the A. schaeuriana act as one of the microhabitats used by the invertebrate biodiversity of the estuarine ecosystem. The present note aimed to inventory the malacofauna associated with roots of Avicennia schaueriana of the hypersaline and inverse estuary, highlighting variations in abundance and diversity along a salinity gradient and different seasonal periods. Methods Three sampling stations were delineated along the course of the estuary. At each station 3 transects of 10 meters were placed, and for each of them 3 sample points were selected, and at each point 3 samples of roots of A. schaueriana were obtained. A total of 108 samples were stored in plastic bags containing 4% formaldehyde and subsequently passed through a screening process, with identification of the associated specimens with the lowest possible taxonomic level. Results A total of 171 specimens was recorded, belonging to 10 species, 7 families, and 9 genera of the Bivalvia and Gastropoda classes. The abundance of the specimens differed between the seasonal periods analyzed. Conclusions The highest species richness and abundance of organisms in the rainy period allows inferences about the importance of the estuarine water cycle in regulating the biodiversity of these environments. Thus, the importance of the maintenance and protection of the mangrove forests composed of A. schaueriana, as well as the need for more in-depth studies becomes evident.