Resumo. The fungi are main micro-organisms associated with seeds, may cause damages, both in the field but also post-harvest and during storage. In this last phase, deterioration can occur by the action of specific fungi, affecting their physiological quality. The use of plant extracts with antimicrobial properties are promising and environmentally friendly alternatives to replace the protection promoted by fungicide application. The objective of this work was to evaluate the effectiveness of extracts of Allamanda blanchetti e Momordica charantia in concentrations of 10, 100, 500 e 1000 ppm on mycoflora and germination in seeds of Enterolobium contortisiliquum . Seeds were collected in different municipalities in the state of Paraiba (Areia, Arara, Conde and Sobrado). The lots were tested for germination and sanity. The evaluation of the incidence of fungus was made from the visualization of fungi by the method of incubation blotter test. Was used the health test 100 seeds per treatment which were immersed in 20 mL of extracts for five minutes, incubated in then Petri dishes on double layer of filter paper. 200 seeds were used in the germination test, with four replications of 25 seeds per treatment, divided into germitest paper and germinated at temperatures of 30 ± 2°C. The experimental design was completely randomized. It was found in the seeds of Enterolobium contortisiliquum the following fungi: Aspergillus niger, Aspergillus flavus , Rhizopus stolonifer , Penicillium sp., Curvularia lunata, Nigrospora sp. and Cladosporium sp. The extracts of Allamanda blanchetti and Momordica charantia at concentrations of 500 and 1000 ppm caused a reduction in the frequency of fungi. The extract of Momordica charantia at concentrations of 500 and 1000 ppm provided an increase in germination and first count, and reduce the percentage of dead seeds.